STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1428Extracellular solute-binding protein. (314 aa)    
Predicted Functional Partners:
OSCT_1427
Polar amino acid ABC transporter, inner membrane subunit.
 0.984
OSCT_1426
ABC transporter related protein.
 
 0.940
OSCT_1653
Polar amino acid ABC transporter, inner membrane subunit.
 0.919
OSCT_1652
ABC transporter related protein.
 
 0.886
OSCT_1227
PAS sensor protein.
   
 0.883
OSCT_1310
PAS fold family protein.
    
 0.880
OSCT_0739
Sensory box histidine kinase/response regulator.
    
 0.874
OSCT_1228
Multi-sensor signal transduction histidine kinase.
   
 0.851
OSCT_1654
Polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.818
OSCT_3164
Response regulator receiver.
  
 0.770
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.