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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1488NifU family SUF system FeS assembly protein. (133 aa)    
Predicted Functional Partners:
OSCT_0542
Aminotransferase class V.
 
 0.997
OSCT_1487
SufS subfamily cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.990
OSCT_0816
Cysteine desulfurase family protein.
 
 0.978
OSCT_1489
FeS assembly protein SufB.
  
  
 0.956
OSCT_3080
Ferredoxin.
  
 0.911
OSCT_1485
FeS assembly ATPase SufC.
  
  
 0.909
OSCT_1486
FeS assembly protein SufD.
  
  
 0.891
OSCT_1092
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
  
 0.847
OSCT_2078
Hypothetical protein.
  
    0.791
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.729
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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