STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1489FeS assembly protein SufB. (675 aa)    
Predicted Functional Partners:
OSCT_1485
FeS assembly ATPase SufC.
 
 0.999
OSCT_1487
SufS subfamily cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.993
OSCT_1488
NifU family SUF system FeS assembly protein.
  
  
 0.955
OSCT_0816
Cysteine desulfurase family protein.
 
 0.926
OSCT_2072
NifU family SUF system FeS assembly protein.
  
  
 0.813
OSCT_2078
Hypothetical protein.
 
   
 0.759
OSCT_1486
FeS assembly protein SufD.
 
    
0.645
OSCT_1490
Rieske (2Fe-2S) domain-containing protein.
 
     0.576
OSCT_1484
Putative transcriptional regulator.
  
  
 0.571
OSCT_3152
Fe-S metabolism associated SufE.
  
 
 0.474
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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