STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1536ABC transporter related protein; Belongs to the ABC transporter superfamily. (368 aa)    
Predicted Functional Partners:
OSCT_1380
Binding-protein-dependent transport systems inner membrane component.
 
 0.999
OSCT_1381
Binding-protein-dependent transport systems inner membrane component.
 
 0.998
OSCT_1379
Extracellular solute-binding protein family 1.
 
 0.993
OSCT_2284
Von Willebrand factor type A.
  
 0.989
OSCT_1941
Extracellular solute-binding protein family 1.
 
 0.979
OSCT_0231
Extracellular solute-binding protein family 1.
 
 0.977
OSCT_1870
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  0.941
OSCT_2411
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
   
 
0.713
OSCT_0044
ABC-2 type transporter.
 
    
 0.705
OSCT_1920
ABC-3 protein.
    
 0.659
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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