STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1576Hydrogenase assembly chaperone hypC/hupF. (72 aa)    
Predicted Functional Partners:
OSCT_2610
Hydrogenase expression/formation protein HypD.
 
 
 0.991
OSCT_2611
Hydrogenase expression/formation protein HypE.
 
 
 0.971
OSCT_1577
Hydrogenase maturation protein HypF.
 
 
 0.906
OSCT_2609
Hydrogenase accessory protein HypB.
  
  
 0.875
OSCT_1578
Putative PAS/PAC sensor protein.
       0.580
OSCT_1575
Hypothetical protein.
       0.554
OSCT_1912
Nickel-dependent hydrogenase large subunit.
 
   
 0.528
OSCT_1911
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
   
 0.522
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
  
 0.500
OSCT_1633
Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.489
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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