STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1646Peptidase U32. (845 aa)    
Predicted Functional Partners:
OSCT_1909
NADH dehydrogenase (quinone).
   
   0.890
OSCT_2597
Cytochrome c oxidase, subunit II.
    
   0.805
OSCT_0472
Cytochrome c class I.
   
   0.790
OSCT_2596
Cytochrome c oxidase, subunit II.
   
   0.790
OSCT_2899
Glycosyl transferase family 2.
    
 0.784
OSCT_2930
NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 30 kDa subunit family.
  
   0.743
OSCT_2009
Putative NADH-ubiquinone oxidoreductase.
   
   0.711
OSCT_1910
Bidirectional hydrogenase complex protein HoxU.
   
   0.703
OSCT_1645
Hypothetical protein.
       0.569
OSCT_1324
Hypothetical protein.
  
   0.557
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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