STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1650Shikimate/quinate 5-dehydrogenase. (687 aa)    
Predicted Functional Partners:
OSCT_1651
Alpha/beta hydrolase fold-containing protein.
       0.773
OSCT_2195
Low molecular weight phosphotyrosine protein phosphatase.
  
     0.637
OSCT_2107
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.603
OSCT_2685
AAA-4 family protein.
  
     0.593
OSCT_2105
Patatin.
  
     0.589
OSCT_0340
Hypothetical protein.
  
     0.562
OSCT_0507
Beta-ketoacyl synthase.
 
 
 0.541
OSCT_0136
Hypothetical protein.
  
     0.510
OSCT_1649
Hypothetical protein.
       0.501
OSCT_1481
Peptidase M23B.
  
     0.500
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.