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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1672Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (463 aa)    
Predicted Functional Partners:
OSCT_1140
aromatic-L-amino-acid decarboxylase.
 
 0.964
OSCT_1424
AMP-dependent synthetase and ligase.
   
 0.949
OSCT_0551
Glutamate synthase (ferredoxin).
     
 0.940
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
 0.930
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.908
OSCT_0547
Short-chain dehydrogenase/reductase SDR.
    
 0.906
OSCT_1593
Threonine dehydratase.
  
 
 0.868
OSCT_1900
Hypothetical protein.
   
 0.857
OSCT_0900
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.799
OSCT_2690
Arginase; Belongs to the arginase family.
 
 
 0.796
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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