Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1726Hypothetical protein. (747 aa)    
Predicted Functional Partners:
OSCT_2505
Hypothetical protein.
 
    0.769
OSCT_0914
Hypothetical protein.
 
     0.739
OSCT_2685
AAA-4 family protein.
 
     0.713
OSCT_0237
Hypothetical protein.
  
     0.693
OSCT_1914
Peptidase C11 clostripain.
  
     0.693
OSCT_0681
Peptidase C60 sortase A and B.
  
     0.665
OSCT_1782
Cell division FtsK/SpoIIIE.
  
     0.655
OSCT_1995
Peptidase C60 sortase A and B.
  
     0.651
OSCT_1839
Patatin.
  
     0.633
OSCT_2837
Methyltransferase type 11.
  
    0.630
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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