STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1743Efflux transporter, RND family, MFP subunit. (489 aa)    
Predicted Functional Partners:
OSCT_1742
Hypothetical protein.
 
     0.866
OSCT_1741
ABC transporter (glutamine transport ATP-binding protein).
  
 
 0.820
OSCT_0805
Hypothetical protein.
 
  
 0.766
OSCT_1329
Protein of unknown function DUF214.
 
  
 0.758
OSCT_2273
Protein of unknown function DUF214.
 
  
 0.751
OSCT_2274
Hypothetical protein.
 
  
 0.744
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.567
OSCT_0886
Hypothetical protein.
 
  
 0.555
OSCT_0806
Probable ABC transporter ATP-binding protein.
 
 
 0.504
OSCT_1330
ABC transporter related protein.
 
 
 0.475
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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