STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1756GCN5-related N-acetyltransferase. (449 aa)    
Predicted Functional Partners:
menC
Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
 
     0.780
OSCT_0059
Alpha-L-arabinofuranosidase-like protein.
  
     0.652
OSCT_0955
ABC-type dipeptide transport system periplasmic component-like protein.
  
     0.605
OSCT_0734
Hypothetical protein.
  
     0.563
OSCT_1757
Thioesterase superfamily protein.
       0.562
OSCT_1016
Peptidase M20.
 
     0.552
OSCT_0693
Hypothetical protein.
  
     0.496
OSCT_1375
Hypothetical protein.
  
     0.481
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.467
OSCT_0983
Peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
  
     0.463
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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