STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
OSCT_1759Methyltransferase type 11. (280 aa)    
Predicted Functional Partners:
OSCT_2341
Magnesium chelatase ATPase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 0.842
OSCT_1760
Hypothetical protein.
       0.805
OSCT_1761
Glycosyl transferase group 1.
 
     0.760
OSCT_1763
Hypothetical protein.
 
     0.723
OSCT_1762
Glycosyl transferase group 1.
       0.686
OSCT_1764
Hypothetical protein.
       0.686
OSCT_1758
Membrane protein-like protein.
 
     0.555
OSCT_0246
Magnesium chelatase.
  
 0.550
OSCT_0039
Lycopene beta and epsilon cyclase.
  
 0.528
OSCT_2128
Lycopene beta and epsilon cyclase.
  
 0.528
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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