STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1775TPR domain protein. (1062 aa)    
Predicted Functional Partners:
OSCT_1772
Peptidase C14, caspase catalytic subunit p20.
 
     0.863
OSCT_1774
ATPase central domain-containing protein.
 
     0.851
OSCT_1227
PAS sensor protein.
   
 0.798
OSCT_2221
Multi-sensor hybrid histidine kinase.
  
 
 0.767
OSCT_1950
TPR repeat-containing protein.
  
     0.760
OSCT_0470
Putative WD-repeat containing protein.
  
 
  0.746
OSCT_1773
Hypothetical protein.
       0.746
OSCT_1310
PAS fold family protein.
   
 0.729
OSCT_0739
Sensory box histidine kinase/response regulator.
   
 0.725
OSCT_2116
Peptidase C14, caspase catalytic subunit p20.
  
 
  0.722
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.