STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1799VanW family protein. (688 aa)    
Predicted Functional Partners:
OSCT_2290
Transcription attenuator LytR.
 
     0.709
OSCT_0814
Cell envelope-related transcriptional attenuator.
  
     0.701
OSCT_0674
Transcription attenuator LytR.
 
     0.674
OSCT_1419
Cell envelope-related transcriptional attenuator.
  
     0.674
OSCT_1541
PT repeat-containing protein.
  
     0.601
OSCT_1798
Molecular chaperone-like protein.
       0.559
OSCT_0681
Peptidase C60 sortase A and B.
  
     0.539
OSCT_1800
Uroporphyrinogen III synthase HEM4.
       0.516
OSCT_1801
Hydroxypyruvate reductase.
       0.516
OSCT_0565
Sortase family protein.
  
     0.491
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.