STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1800Uroporphyrinogen III synthase HEM4. (276 aa)    
Predicted Functional Partners:
OSCT_2402
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.965
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
 0.963
OSCT_1360
Porphobilinogen synthase; Belongs to the ALAD family.
 
 0.916
OSCT_1801
Hydroxypyruvate reductase.
       0.773
OSCT_2403
precorrin-3B C17-methyltransferase.
 
  
 0.756
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.687
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
 
 
 0.606
OSCT_1359
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
 
0.583
OSCT_2405
Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.
  
  
 0.548
OSCT_1799
VanW family protein.
       0.516
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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