Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OSCT_1802Radical SAM domain-containing protein. (335 aa)    
Predicted Functional Partners:
OSCT_1734
Hypothetical protein.
  
 
 0.684
OSCT_3062
Iron-containing alcohol dehydrogenase.
  
 
 0.684
OSCT_2998
Hypothetical protein.
  
  
 0.609
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.589
OSCT_1803
Signal peptidase I; Belongs to the peptidase S26 family.
       0.543
OSCT_1804
Glycosyl transferase group 1.
       0.518
OSCT_1490
Rieske (2Fe-2S) domain-containing protein.
   
  
 0.503
OSCT_0609
Hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.480
OSCT_2704
Cyclic nucleotide-binding protein.
 
   
 0.460
OSCT_1800
Uroporphyrinogen III synthase HEM4.
  
    0.452
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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