Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1819Hypothetical protein. (176 aa)    
Predicted Functional Partners:
OSCT_3108
Hypothetical protein.
   
 
 0.836
OSCT_2892
Photosynthetic reaction center subunit M.
   
 
 0.743
OSCT_2893
Photosynthetic reaction center L subunit.
   
 
 0.743
OSCT_1787
Substrate-binding region of ABC-type glycine betaine transport system.
  
    0.662
OSCT_2692
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
   
    0.634
OSCT_0437
Putative PAS/PAC sensor protein.
  
    0.477
OSCT_0393
Anti-sigma-factor antagonist.
  
    0.472
OSCT_1766
Sulfate transporter/antisigma-factor antagonist STAS.
  
    0.470
OSCT_0272
Anti-sigma-factor antagonist.
  
    0.467
OSCT_1722
Anti-sigma-factor antagonist.
  
    0.464
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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