Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1829Protein of unknown function DUF497. (92 aa)    
Predicted Functional Partners:
OSCT_0789
Hypothetical protein.
  
   
 0.756
OSCT_0995
Hypothetical protein.
  
     0.728
OSCT_0788
Hypothetical protein.
  
   
 0.700
OSCT_2086
PilT domain-containing protein.
  
   
 0.680
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.665
OSCT_2375
Protein containing DUF433.
  
     0.659
OSCT_1836
Hypothetical protein.
  
     0.631
OSCT_3013
Hypothetical protein.
  
     0.574
OSCT_1752
Hypothetical protein.
  
   
 0.543
OSCT_0347
Hypothetical protein.
  
     0.494
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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