STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1897TetR family transcriptional regulator. (230 aa)    
Predicted Functional Partners:
OSCT_1898
NAD-dependent epimerase/dehydratase.
 
     0.934
OSCT_3040
NAD-dependent epimerase/dehydratase.
  
     0.616
OSCT_3039
Phospholipid/glycerol acyltransferase.
  
     0.598
OSCT_1900
Hypothetical protein.
  
 
 0.569
OSCT_0069
Hypothetical protein.
  
     0.561
OSCT_2101
GMC oxidoreductase family.
  
 
 0.472
OSCT_1525
Transcriptional regulator, TetR family.
  
     0.456
pth
aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.409
OSCT_0507
Beta-ketoacyl synthase.
    
 0.404
OSCT_1439
Hypothetical protein.
  
     0.403
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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