STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1922Tetratricopeptide TPR_4 containing protein. (232 aa)    
Predicted Functional Partners:
OSCT_1923
Glycosyl transferase family protein.
      0.912
OSCT_1227
PAS sensor protein.
   
 0.802
OSCT_1310
PAS fold family protein.
   
 0.769
OSCT_1920
ABC-3 protein.
       0.763
OSCT_1918
ABC transporter periplasmic binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
       0.762
OSCT_1919
ABC transporter related protein.
       0.762
OSCT_1921
Cobalt-zinc-cadmium resistance protein.
       0.762
OSCT_2167
Serine/threonine protein kinase.
  
 
 0.671
OSCT_0556
Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
   
 0.625
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.598
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.