Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1933Response regulator receiver. (407 aa)    
Predicted Functional Partners:
OSCT_0774
Response regulator.
 
 
    0.915
OSCT_2761
Type II secretion system protein.
 
 
 0.902
OSCT_2764
SAF domain-containing protein.
  
 
 0.870
OSCT_0465
PAS/PAC sensor signal transduction histidine kinase.
 
    0.868
OSCT_0334
Histidine kinase.
 
     0.847
OSCT_0408
PAS/PAC sensor signal transduction histidine kinase.
 
     0.818
OSCT_0102
Histidine kinase.
 
    0.805
OSCT_2760
Type II secretion system protein.
 
 
 0.795
OSCT_3076
Histidine kinase.
 
     0.779
OSCT_2612
Multi-sensor signal transduction histidine kinase.
 
     0.770
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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