Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
OSCT_1946Hypothetical protein. (298 aa)    
Predicted Functional Partners:
OSCT_1424
AMP-dependent synthetase and ligase.
  
 
 0.937
OSCT_1801
Hydroxypyruvate reductase.
  
 
 0.855
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
  0.853
OSCT_0676
Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
 
 0.850
OSCT_2969
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
  0.808
OSCT_1666
Hypothetical protein.
    
 0.779
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.776
OSCT_0900
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.752
OSCT_1900
Hypothetical protein.
  
 
 0.663
OSCT_1410
Acetyl coenzyme A synthetase subunit alpha.
    
  0.641
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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