STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2128Lycopene beta and epsilon cyclase. (391 aa)    
Predicted Functional Partners:
OSCT_1424
AMP-dependent synthetase and ligase.
  
 0.813
OSCT_0677
Phytoene desaturase.
  
 
 0.797
OSCT_2899
Glycosyl transferase family 2.
  
 0.763
OSCT_2127
Hypothetical protein.
       0.757
OSCT_1135
hydroxymethylglutaryl-CoA synthase.
  
  
 0.747
OSCT_0163
Phytoene desaturase.
  
 
 0.687
OSCT_1134
hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
   
  
 0.679
OSCT_0944
Squalene/phytoene synthase.
  
 
 0.590
OSCT_0851
Hypothetical protein.
   
 0.577
OSCT_0507
Beta-ketoacyl synthase.
  
 0.547
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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