STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2131Hypothetical protein. (637 aa)    
Predicted Functional Partners:
OSCT_1909
NADH dehydrogenase (quinone).
    
  0.971
OSCT_2009
Putative NADH-ubiquinone oxidoreductase.
 
   0.789
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.781
OSCT_1910
Bidirectional hydrogenase complex protein HoxU.
    
 
 0.760
OSCT_2303
Peptidase M16 domain protein; Belongs to the peptidase M16 family.
    
 
 0.752
OSCT_2992
Plastoquinol--plastocyanin reductase.
   
   0.744
OSCT_3080
Ferredoxin.
    
   0.667
OSCT_1988
Hypothetical protein.
   
  0.646
OSCT_1908
NADH dehydrogenase (ubiquinone) 24 kDa subunit.
    
  0.612
OSCT_0507
Beta-ketoacyl synthase.
  
  
 0.574
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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