STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2137Protein of unknown function DUF214. (409 aa)    
Predicted Functional Partners:
OSCT_2139
ABC transporter related protein.
 
 0.946
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.860
OSCT_0806
Probable ABC transporter ATP-binding protein.
 
 0.858
OSCT_1330
ABC transporter related protein.
 
 0.846
OSCT_1260
ABC transporter ATP-binding protein.
 
 0.839
OSCT_1741
ABC transporter (glutamine transport ATP-binding protein).
 
 0.836
OSCT_2135
Transcriptional regulator, TetR family.
 
     0.818
OSCT_2605
ABC transporter related protein.
 
 0.809
OSCT_2136
Transcriptional regulator, TetR family.
       0.773
OSCT_2138
Protein of unknown function DUF214.
 
    
0.669
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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