Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2149Hypothetical protein. (400 aa)    
Predicted Functional Partners:
OSCT_2158
Resolvase related protein.
 
    0.773
OSCT_0018
IS605 family transposase OrfB.
  
     0.753
OSCT_1270
Transposase, IS605 OrfB family.
  
     0.751
OSCT_0420
Transposon IS605 OrfB.
  
     0.724
OSCT_1258
Transposase.
  
     0.724
OSCT_0372
Transposon IS605 OrfB.
  
     0.714
OSCT_1047
Transposase.
  
     0.709
OSCT_3043
IS605 family transposase OrfB.
  
     0.705
OSCT_1218
Unnamed protein product.
  
     0.424
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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