Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OSCT_2160Short-chain dehydrogenase/reductase SDR. (64 aa)    
Predicted Functional Partners:
OSCT_1424
AMP-dependent synthetase and ligase.
  
 0.937
OSCT_0551
Glutamate synthase (ferredoxin).
     
 0.882
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
 0.867
OSCT_0392
Immunoglobulin I-set domain protein.
   
 
 0.764
OSCT_0507
Beta-ketoacyl synthase.
  
 0.706
OSCT_2365
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.689
OSCT_1900
Hypothetical protein.
  
 0.671
OSCT_0164
Malonyl CoA-acyl carrier protein transacylase.
  
 0.515
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.496
OSCT_0856
Hypothetical protein.
  
 
   0.486
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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