STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2163Glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family. (267 aa)    
Predicted Functional Partners:
OSCT_0035
Undecaprenyl-phosphate galactose phosphotransferase.
   
 0.965
OSCT_0475
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 0.952
OSCT_2644
Undecaprenyl-phosphate glucose phosphotransferase.
   
 0.811
OSCT_2164
Carboxyl transferase.
       0.757
OSCT_1643
Glycosyl transferase family 4.
 
 
 
 0.728
OSCT_0667
Glycosyl transferase family protein.
 
 
 
 0.719
OSCT_0026
Glycosyl transferase family 2.
     0.628
OSCT_2899
Glycosyl transferase family 2.
 
 
 0.604
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.459
OSCT_2290
Transcription attenuator LytR.
 
   
 0.453
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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