STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2169AD-dependent pyridine nucleotide-disulfide oxidoreductase. (450 aa)    
Predicted Functional Partners:
OSCT_2991
Hypothetical protein.
   
 0.981
OSCT_0551
Glutamate synthase (ferredoxin).
    
 0.954
OSCT_1490
Rieske (2Fe-2S) domain-containing protein.
  
 0.942
OSCT_3080
Ferredoxin.
  
 
 0.913
OSCT_0744
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.837
OSCT_2591
Fe-S-cluster-containing hydrogenase components 1-like protein.
    
 0.806
OSCT_2664
Fe-S-cluster-containing hydrogenase components 1-like protein.
    
 0.806
hisI
phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.800
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
    0.794
OSCT_0851
Hypothetical protein.
  
 
 0.740
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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