STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2189Lytic transglycosylase catalytic. (787 aa)    
Predicted Functional Partners:
OSCT_2730
Protein kinase.
 
 
 0.983
OSCT_1035
Cell wall hydrolase/autolysin.
 
  
 0.950
OSCT_2680
Hypothetical protein.
 
  
 0.801
OSCT_2861
WD40 domain-containing protein.
 
  
 0.799
OSCT_2200
WD40 domain-containing protein.
 
  
 0.775
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
  
 0.765
OSCT_1803
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.739
OSCT_2561
Peptidase S26B, signal peptidase.
  
  
 0.739
OSCT_1138
Hypothetical protein.
  
  
 0.731
OSCT_1719
Peptidoglycan-binding domain 1 protein.
  
  
 0.731
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.