STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2189Lytic transglycosylase catalytic. (787 aa)    
Predicted Functional Partners:
OSCT_2730
Protein kinase.
 
 
 0.956
OSCT_1035
Cell wall hydrolase/autolysin.
 
  
 0.941
OSCT_2963
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.928
OSCT_1899
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.914
OSCT_0115
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.912
OSCT_2877
Peptidylprolyl isomerase FKBP-type.
   
 
 0.893
OSCT_1803
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.767
OSCT_2561
Peptidase S26B, signal peptidase.
  
  
 0.767
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
  
 0.756
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
 
   
 0.754
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.