STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2211Methyltransferase type 11. (199 aa)    
Predicted Functional Partners:
OSCT_0507
Beta-ketoacyl synthase.
    
 0.890
OSCT_2213
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.798
OSCT_2212
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.774
OSCT_2214
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell; Belongs to the MscL family.
       0.741
OSCT_0834
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.676
argS
arginyl-tRNA synthetase.
       0.639
OSCT_2215
Hypothetical protein.
       0.598
OSCT_2216
HAD family hydrolase; Belongs to the HAD-like hydrolase superfamily.
       0.598
OSCT_2899
Glycosyl transferase family 2.
  
 
 0.487
OSCT_0008
Glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.439
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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