Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2245Hypothetical protein. (463 aa)    
Predicted Functional Partners:
OSCT_2246
Abortive phage resistance protein.
 
     0.952
OSCT_3074
Fibronectin-binding A domain protein.
  
    0.832
OSCT_0155
Hypothetical protein.
  
    0.806
OSCT_1539
Hypothetical protein.
  
    0.806
OSCT_2247
Hypothetical protein.
 
     0.734
OSCT_2248
Hypothetical protein.
 
     0.727
OSCT_1930
Superfamily I DNA/RNA helicase.
  
    0.689
OSCT_2087
Hypothetical protein.
  
    0.689
OSCT_0529
Hypothetical protein.
  
    0.588
OSCT_2329
Plasmid maintenance system antidote protein, XRE family.
 
     0.545
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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