STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2251Hypothetical protein. (180 aa)    
Predicted Functional Partners:
OSCT_2252
AAA family ATPase, CDC48 subfamily protein; Belongs to the AAA ATPase family.
 
 
 0.958
OSCT_2546
Gas vesicle synthesis protein GvpS (GvpA-related); Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.787
OSCT_2547
Gas vesicle synthesis GvpLGvpF.
 
    0.786
OSCT_2545
Hypothetical protein.
 
     0.780
OSCT_2544
Gas vesicle synthesis GvpLGvpF.
 
    0.774
OSCT_2548
F087458_3 gas vesicle protein N.
  
     0.774
clpB
ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.697
OSCT_0461
ATPase AAA-2 domain protein; Belongs to the ClpA/ClpB family.
  
 
 0.697
OSCT_1343
ATPase; Belongs to the ClpA/ClpB family.
  
 
 0.697
OSCT_1483
ATPase.
  
 
 0.697
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.