STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2252AAA family ATPase, CDC48 subfamily protein; Belongs to the AAA ATPase family. (710 aa)    
Predicted Functional Partners:
OSCT_2251
Hypothetical protein.
 
 
 0.958
OSCT_2844
Histone deacetylase superfamily.
 
 
 0.888
OSCT_0392
Immunoglobulin I-set domain protein.
    
 0.817
OSCT_2547
Gas vesicle synthesis GvpLGvpF.
 
     0.781
OSCT_2546
Gas vesicle synthesis protein GvpS (GvpA-related); Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.772
OSCT_2022
SNF2-related helicase.
  
 
 0.771
OSCT_2548
F087458_3 gas vesicle protein N.
 
     0.769
OSCT_2545
Hypothetical protein.
 
     0.765
OSCT_2791
Hypothetical protein.
    
 
 0.765
OSCT_2544
Gas vesicle synthesis GvpLGvpF.
 
     0.764
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.