STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OSCT_2294AAA ATPase central domain protein. (486 aa)    
Predicted Functional Partners:
OSCT_2682
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 
 0.823
OSCT_2233
ATP-dependent DNA helicase RecQ.
  
 
 0.784
OSCT_2952
ATP-dependent DNA helicase RecQ.
  
 
 0.784
OSCT_2295
Hypothetical protein.
       0.773
OSCT_2296
Tetratricopeptide domain-containing protein.
       0.773
OSCT_2070
Appr-1-p processing domain-containing protein; Belongs to the Nudix hydrolase family.
  
   0.703
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.631
OSCT_2297
Hypothetical protein.
       0.547
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
     0.451
OSCT_0602
HAD family hydrolase; Belongs to the HAD-like hydrolase superfamily.
 
      0.444
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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