Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OSCT_2299Xylose isomerase domain-containing protein. (383 aa)    
Predicted Functional Partners:
aroQ
Hypothetical protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
 0.878
OSCT_2300
Hypothetical protein.
       0.746
OSCT_2301
Hypothetical protein.
       0.746
OSCT_2347
Conserved repeat domain protein.
  
     0.744
OSCT_3108
Hypothetical protein.
  
     0.743
OSCT_0693
Hypothetical protein.
  
     0.730
OSCT_3079
Hypothetical protein.
 
     0.729
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.726
OSCT_0460
GAF domain-containing protein.
  
    0.718
OSCT_2967
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.708
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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