STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2299Xylose isomerase domain-containing protein. (383 aa)    
Predicted Functional Partners:
aroQ
Hypothetical protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
  
 
 0.885
OSCT_0007
Oxidoreductase domain-containing protein.
  
 
 0.879
OSCT_0698
Inositol 2-dehydrogenase.
  
 
 0.879
OSCT_2075
Oxidoreductase domain protein.
  
 
 0.879
OSCT_2300
Hypothetical protein.
       0.746
OSCT_2301
Hypothetical protein.
       0.746
OSCT_2347
Conserved repeat domain protein.
  
     0.744
OSCT_3108
Hypothetical protein.
  
     0.743
OSCT_0693
Hypothetical protein.
  
     0.730
OSCT_2804
PfkB domain protein.
 
 
 0.729
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.