STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lexASOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (215 aa)    
Predicted Functional Partners:
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.984
OSCT_3182
DNA methylase N-4/N-6 domain-containing protein; Belongs to the N(4)/N(6)-methyltransferase family.
    
 0.845
OSCT_0782
DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
    
 0.736
OSCT_1438
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.719
dinG
DNA polymerase III, epsilon subunit; 3'-5' exonuclease.
 
  
 0.644
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.554
OSCT_1679
DNA polymerase III, epsilon subunit.
     
 0.528
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.522
OSCT_2673
Helix-turn-helix domain-containing protein.
   
 
 0.513
OSCT_2331
Transcriptional regulator protein.
       0.512
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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