STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2346PUCC protein. (451 aa)    
Predicted Functional Partners:
OSCT_2345
Hypothetical protein.
 
    0.954
OSCT_2344
Alcohol dehydrogenase.
 
  
 0.929
OSCT_2343
Chlorophyllide reductase iron protein subunit X; Belongs to the NifH/BchL/ChlL family.
 
    0.872
OSCT_1364
BchN; F288460_2 BchN.
 
    0.816
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.802
OSCT_2893
Photosynthetic reaction center L subunit.
  
    0.796
OSCT_2892
Photosynthetic reaction center subunit M.
  
    0.795
OSCT_2462
Chlorophyllide reductase subunit Y.
  
    0.791
OSCT_2461
Chlorophyllide reductase subunit Z.
  
    0.789
OSCT_3107
Bacteriochlorophyll/chlorophyll synthetase.
 
    0.785
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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