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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2385Hypothetical protein. (364 aa)    
Predicted Functional Partners:
OSCT_2392
Hydrolase.
  
 
 0.911
OSCT_2387
Hypothetical protein.
       0.791
OSCT_2388
CRISPR-associated Csm3 family protein.
       0.791
OSCT_2390
Hypothetical protein.
  
    0.790
OSCT_2391
Hypothetical protein.
       0.788
OSCT_2386
Hypothetical protein.
       0.782
OSCT_2389
Hypothetical protein.
       0.782
OSCT_2393
Hypothetical protein.
     
 0.730
OSCT_2384
Hypothetical protein.
       0.651
OSCT_0084
Hydrolase.
  
 
 0.623
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.