STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2453Peptidase M23B. (581 aa)    
Predicted Functional Partners:
OSCT_1024
Peptidase M23B.
  
     0.775
OSCT_0810
Peptidase M23B.
  
     0.748
OSCT_2442
Hypothetical protein.
  
    0.699
OSCT_1481
Peptidase M23B.
  
     0.638
OSCT_1437
TPR repeat-containing protein.
  
     0.637
OSCT_1641
Alpha/beta hydrolase fold-containing protein.
  
     0.631
OSCT_2189
Lytic transglycosylase catalytic.
 
  
 0.611
OSCT_1106
Glycosyl transferase family protein.
  
     0.605
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
 
     0.597
OSCT_2808
TPR repeat-containing protein.
  
     0.592
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.