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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2454Short chain dehydrogenase. (656 aa)    
Predicted Functional Partners:
OSCT_1424
AMP-dependent synthetase and ligase.
  
 0.961
OSCT_0507
Beta-ketoacyl synthase.
  
 0.937
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
 0.923
OSCT_2588
Carbohydrate kinase FGGY.
  
 
 0.888
OSCT_0551
Glutamate synthase (ferredoxin).
     
 0.874
OSCT_2317
Dihydroxyacetone kinase, phosphotransfer subunit.
   
 
 0.808
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 0.795
OSCT_1213
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 
 0.769
OSCT_2455
Fructose-1,6-biphosphate aldolase class I-like protein.
 
 
  0.688
OSCT_0392
Immunoglobulin I-set domain protein.
   
 
 0.685
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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