Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2470CopY family transcriptional regulator. (139 aa)    
Predicted Functional Partners:
OSCT_1121
Copper ion binding protein.
  
  
 0.789
htpX
Peptidase M48 Ste24p; Belongs to the peptidase M48B family.
  
 
  0.599
OSCT_1858
Hypothetical protein.
    
  0.510
OSCT_1968
Hypothetical protein.
 
     0.481
OSCT_2590
Hypothetical protein.
    
  0.469
OSCT_2469
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.459
OSCT_1035
Cell wall hydrolase/autolysin.
    
  0.449
OSCT_2468
Glycosyl transferase, group 1.
       0.435
OSCT_2129
Hypothetical protein.
 
   
 0.427
OSCT_1371
Hypothetical protein.
     
  0.417
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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