STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2504GCN5-related N-acetyltransferase. (333 aa)    
Predicted Functional Partners:
OSCT_2503
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
 
     0.845
aroB
Hypothetical protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
    
  0.667
OSCT_2673
Helix-turn-helix domain-containing protein.
 
 
 0.578
OSCT_1629
Major facilitator transporter.
  
     0.542
OSCT_2012
Chromosome segregation ATPase-like protein.
 
     0.490
OSCT_1593
Threonine dehydratase.
    
  0.471
OSCT_2299
Xylose isomerase domain-containing protein.
  
     0.471
OSCT_2680
Hypothetical protein.
  
     0.471
OSCT_0780
Transcriptional activator domain protein.
  
     0.458
OSCT_2357
Glutaredoxin-like protein.
  
  
 0.452
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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