STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2522Ribulose bisophosphate carboxylase; Belongs to the RuBisCO large chain family. (459 aa)    
Predicted Functional Partners:
OSCT_2523
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-2.
 
 0.995
OSCT_2524
AAA ATPase, central region.
 
  
 0.909
OSCT_2525
Phosphoribulokinase.
 
  
 0.795
mtnA
aIF-2BI family translation initiation factor; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
 
 0.729
OSCT_2365
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.630
OSCT_2306
Phosphoribulokinase/uridine kinase.
 
  
 0.544
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.523
OSCT_1842
O-acetylhomoserine/O-acetylserine sulfhydrylase.
   
  
 0.515
OSCT_2159
O-acetylhomoserine/O-acetylserine sulfhydrylase.
   
  
 0.515
OSCT_0159
Haloacid dehalogenase superfamily enzyme, subfamily IA.
    
 0.513
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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