STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2548F087458_3 gas vesicle protein N. (305 aa)    
Predicted Functional Partners:
OSCT_2547
Gas vesicle synthesis GvpLGvpF.
 
   
 0.867
OSCT_2546
Gas vesicle synthesis protein GvpS (GvpA-related); Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.793
OSCT_2545
Hypothetical protein.
 
     0.781
OSCT_2544
Gas vesicle synthesis GvpLGvpF.
  
     0.775
OSCT_2251
Hypothetical protein.
  
     0.774
OSCT_2252
AAA family ATPase, CDC48 subfamily protein; Belongs to the AAA ATPase family.
 
     0.769
OSCT_2552
Sensor histidine kinase PAS domain-containing protein.
  
     0.603
OSCT_2549
Hypothetical protein.
       0.490
OSCT_2265
Hypothetical protein.
  
    0.400
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.