STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2634Transcriptional regulator, MarR family. (234 aa)    
Predicted Functional Partners:
OSCT_2633
Multi-sensor hybrid histidine kinase.
  
  
 0.712
OSCT_2591
Fe-S-cluster-containing hydrogenase components 1-like protein.
     
  0.657
OSCT_2664
Fe-S-cluster-containing hydrogenase components 1-like protein.
     
  0.657
lon-3
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.608
OSCT_2673
Helix-turn-helix domain-containing protein.
 
 
 0.504
OSCT_3080
Ferredoxin.
  
   
 0.434
OSCT_3050
Regulatory protein MarR.
  
     0.430
OSCT_1310
PAS fold family protein.
  
  
 0.425
OSCT_2630
Multi-sensor signal transduction histidine kinase.
 
   
 0.417
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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