STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2643Orn/DAP/Arg decarboxylase 2. (508 aa)    
Predicted Functional Partners:
OSCT_2690
Arginase; Belongs to the arginase family.
  
 
 0.945
OSCT_2310
Agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.932
argH
Argininosuccinate lyase.
     
 0.858
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.588
OSCT_2442
Hypothetical protein.
 
     0.548
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
0.533
OSCT_2015
Peptidase M14 carboxypeptidase A.
 
     0.509
OSCT_0652
Hypothetical protein.
  
     0.493
OSCT_1650
Shikimate/quinate 5-dehydrogenase.
  
   
 0.462
OSCT_2791
Hypothetical protein.
  
     0.435
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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