Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2742Hypothetical protein. (646 aa)    
Predicted Functional Partners:
OSCT_2741
Hypothetical protein.
      0.577
OSCT_2800
NB-ARC domain-containing protein.
  
     0.507
OSCT_3141
YD repeat protein.
  
    0.486
OSCT_1267
SLEI family.
 
     0.477
OSCT_1775
TPR domain protein.
 
     0.465
OSCT_1905
Tetratricopeptide TPR_2 repeat protein.
  
     0.463
OSCT_2465
Probable aggregation factor core protein MAFp3, isoform C.
  
     0.431
OSCT_2743
Hexapaptide repeat-containing transferase.
       0.426
OSCT_1139
WD-40 repeat-containing protein.
 
    0.420
OSCT_2116
Peptidase C14, caspase catalytic subunit p20.
 
    0.412
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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