STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2756Aspartate/glutamate/uridylate kinase. (269 aa)    
Predicted Functional Partners:
OSCT_2121
GHMP kinase domain-containing protein.
  
  
 0.880
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.877
OSCT_2469
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
  0.861
OSCT_2755
UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
       0.780
OSCT_1135
hydroxymethylglutaryl-CoA synthase.
  
   
 0.769
OSCT_2757
Hypothetical protein.
       0.766
OSCT_1137
Hypothetical protein.
  
     0.759
OSCT_0741
Hypothetical protein.
  
     0.739
OSCT_1136
acetyl-CoA acetyltransferase-like protein.
  
     0.662
OSCT_1003
Mevalonate kinase.
 
   
 0.638
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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