Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2764SAF domain-containing protein. (347 aa)    
Predicted Functional Partners:
OSCT_2761
Type II secretion system protein.
  
 
 0.948
OSCT_2760
Type II secretion system protein.
  
 
 0.940
OSCT_2763
Response regulator receiver protein.
  
 
 0.928
OSCT_1309
Response regulator receiver.
  
 
 0.870
OSCT_1933
Response regulator receiver.
  
 
 0.870
OSCT_2769
TadE family protein.
  
  
 0.752
OSCT_2762
Type II secretion system protein E.
  
 
 0.718
OSCT_0692
TadE family protein.
  
  
 0.706
OSCT_2767
Von Willebrand factor type A.
  
 
 0.704
OSCT_0162
Type II secretion system protein E.
  
 
 0.625
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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